Right you are guys, I definitely need to update this thread.
Here's the chronicle from where I last left off. I tossed some spray paint on the bike to cover the bare metal. put the remainder of the bike together and it was having running issues. Found the condenser was not grounded properly, then there was a piece of rubber stuck in the crossover tubes between the carbs. Got the bike together and running properly the Sat. morning that my brother in law showed up.
We got to go for a couple rides Sat. here's a few shots of the bike that day.
Sunday I got to go for another ride out the a local golf course to play a round, and about a mile from the course my bike backfired then all the lights went out and it started running on one cylinder again. Fortunately my dad was able to come down and we loaded the bike into the back of my pickup, I said forget it I'll look at it later and played some golf.
When I got time to look at it I found the battery bone dry- checked the charging voltage and it was around 17V! Oops. I never really checked on the battery water level, I think it got completely dried out and shorted everything else out. I got another battery to see if there were any more problems and sure enough it was still running on one cylinder. I pulled the carb back apart on the left side some sort of filing was stuck dead center in my pilot jet. The rest of the carb was spotless. Now the bike starts first kick every single time, even dead cold.
I got a new regulator for the bike, but it's a little bit different style so I had to rewire things a bit. That's where I'm at right now, just finishing up the rewire and put my new battery in. Should be really ready to ride this weekend. I hope.